Monday, January 3, 2011

Cloning

What is Cloning?



1. Who is Dolly? Dolly was the first organism cloned. She was a sheep who was cloned in 1997.

2. When a zygote divides into to separate cells, it is called: This process is called twinning.

3. Somatic cells are also called ________. Somatic cells are non-reproductive cells, in comparison to germ cells.

4. In order to clone a gene, a gene is inserted into a _______. The gene is inserted in a plasmid.

5. In order to create an embryo from a somatic cell, the donor egg cell must have its nucleus removed.



Click and Clone

6. List all the materials needed to clone a mouse.

A mouse to clone
An egg cell donor
A surrogate mother
A microscope
Petri dishes
A sharp pipette
A blunt pipette
A chemical to stimulate cell division



7. Place the following steps in the correct order.

Isolate donor cells from egg donor and germ cell donor
Remove and discard the nucleus from the egg cell
Transfer the somatic cell nucleus into the egg cell
Stimulate cell division
Implant embryo into a surrogate mother
Deliver baby



8. There are two time gaps in the process of cloning. What are they? (ie. what do you have to wait for?)

You have to wait for a) the egg cell to associate with the somatic cell's nucleus after the somatic nucleus transfer. b)
The egg cell needs to divide 16 times in a petri dish, after cell division is stimulated.


9. What color with the cloned mouse be? Mini-Mimi will be brown, because her mother, Mimi, was brown. What is the name of this mouse? Her name is Mini-Mimi, due to her resemblance to her mother.

Why Clone?

10. Why is cloning extinct animals problematic?

First of all, you need a well-preserved DNA sample, which is quite rare in ancient animals because of thousands or even millions of years of weathering and natural processes. Also, you need a closely related animal that would serve as a surrogate mother. Finally, you need a male AND female sample to regenerate a whole population.

11. What are some reasons a person might want to clone a human?

You might clone a human to give children to someone who is infertile, by providing half of one parent's chromosomes and half of the other's. Also, you could replace a stillborn or miscarriaged baby, or an infant who died early, allowing the parent's to retain their child's genetic uniqueness.

The Clone Zone

12. What animal was cloned in 1885? A sea urchin was cloned.

13. How did Spemann separate the two cells of the embryo of a salamander in 1902? Spemann separated two cells of the embryo of a salamander with baby hair fashioned as a noose.

14. The process of removing a nucleus is called _____. This process is known as enucleation.

15. In 1952, the nucleus of a frog embryo cell was placed into a donor cell. Did it work to clone the animal? Yes, but more of the cloned frogs grew abnormally, compared to normally born frogs.

16. Can the nucleus of an adult cell be injected into an egg cell and produce a clone? Yes, for it was first accomplished in 1968.

17. Why are mammals hard to clone? Because their eggs are much smaller, making nucleic manipulation much tougher.

18. What were the names of the first two cloned cows? Their names where Fusion and Copy, who were born in 1986.

19. In what year was the National Bioethics Advisory Council formed? It was formed in 1995 by Bill Clinton and his administration.

20. The first mammal clone to be produced from an adult (somatic) cell? The first SCNT-born mammal was Dolly, a sheep. She was cloned in 1996 by Ian Wilmut and Keith Campbell.

21. What do scientists do to adult cells to make them "behave" like embryos? They implant them in an egg cell, masquerading the somatic cells as germ cells.

22. Transgenic, cloned sheep were used to produce what medical protein? They were used to create Factor IX, which treats hemophilia.

23. What is a stem cell? Stem cells are the basic cells of the body, which can change and transform into any cell of a body.

Cloning Myths

24. Briefly describe in your own words, why CC the cat was not identical in color to Rainbow, even though she was a clone?

This difference is due to X-inactivation. When a female has two X chromosomes, it usually goes through a process known as x-inactivation. CC had a different X chromosome inactivated, leading to a different fur coat, because its gene is on the X chromosome.

25. What is "nature vs nurture"?

Nature vs nurture is the debate of whether behavior and phenotypic expression is due to its genome or its epigenome, respectively. While cloned animals will have the same nature, the epigenetic tags acquired throughout life will be different, for whatever reasons. In my opinion, nature forms the backbone of who we are and our basic type of behaviors, while the experiences, subtleties and feelings we gain throughout life are all due the type of environment we were raised in.




Is it Cloning or Not?

26. For each of the following scenarios, indicate YES (it is cloning) or NO (it is not cloning)

No_Sperm taken from a mole goat is combined with a female's egg in a petri dish. The resulting embryo is implanted into the female's uterus to develop
Yes_A sheep embryo, composed of 16 cells, is removed from the mother's uterus and separated into indivudal cells. Each cell is allowed to multiply, creating 16 separate embryos, which are then implanted in different female sheep to develop to maturity.
Yes_A cow with many desirable traits is stimulated with hormones to produce a number of egg cells. Each of these eggs is fertilized and implanted into a surrogate mother.
No_ In vitro fertilization
Yes_ Cell nuclei from an extinct wolly mammoth are placed into enucleated cow cells.



27. Define or describe each of the following processes (you may need to reset the Cloning or Not Screen)

Invitro fertilization- In vitro fertilization is the process of fertilizing an egg with sperm outside of the body, resulting in a zygote which is placed back in the mother's uterus. This is particularly used when patients are infertile, or would like multiple children. The first living child who was conceived in IVF was Louise Brown, in 1977.

Embryo splitting Embryo splitting is a rudimentary cloning technique, first used by Hans Adolf in 1885, in which it was used to clone sea urchins. He split an embryo just by shaking the egg itself. However, embryo splitting techniques are now much more advanced and precise.

Somatic Cell Nuclear Transfer Somatic cell nuclear transfer is a cloning technique that was most famously used to clone Dolly the sheep. First, a somatic cell is taken from the organism that is going to be cloned and goes through enucleation, the removal of the nucleus. A donated egg cell is also enucleated. This "empty" egg cell will then have the somatic cell's nucleus inserted through a sharp pipette. Then, a chemical will stimulate cell division in the egg cell, leading to a 16-cell embryo. This embryo is then put in a surrogate mother's uterus, leading to the embryo's birth.

Multiple Ovulation Embryo Transfer Multiple Ovulation Embryo Transfer (MOET) is a technique to speed up the long process of pregnancy. During a female animal's ovulation period, hormones are injected to create more eggs. She is then inseminated, and the more eggs, the higher chance she has to have an embryo. Before the embryo attaches to the uterine wall, scientists remove it and place it in another female's uterine when they are the most prepared for gestation. This leads to a speeded up birth.

Artificial Insemination Artificial insemination (AI) is the process of sperm being injected into a female's cervix or uterine not through sexual intercourse. This occurs usually in humans, when a single mother, lesbian, or an unable partner is not able to produce sperm for the female. The sperm can be donated by a male spouse who lacks a physical or psychological ability to reproduce naturally, and must have it done through AI. Also, a sperm donor can be used.

What Are the Risks of Cloning?

28. What is one reason why cloning animals has such a high failure rate?

Sometimes, the egg cell with its nucleus removed will not respond well to the implanted somatic cell nucleus, rendering the nucleus useless.

29. What is a telomere and how does it affect cloned animals?

Theoretically, it seems that the telomeres at the end of chromosomes would severely hurt cloned animals, leading to much quicker aging. This hypothesis is based off of the fact the clones would have identical DNA to somatic cells of the cloned animal, because they used the exact same nucleus. However, in the majority of cases, cloned animals have LONGER telomeres than their naturally born counterparts.




What Are Some Issues in Cloning?

30. Pick one of the questions to ponder and ....ponder it. Write a brief essay on your thoughts and opinions.

Should cloning research be regulated?

Have you ever felt frightened or scared by the prospect of cloning, like in science fiction films and novels? Well, though they are quite unrealistic, cloning certainly needs to be regulated. Cloning regulation should be done by the FDA, though not falling under the food and drug umbrella, because they have the most familiarity of governmental regulatory organizations with controversial genetic issues.


The regulations imposed on animal cloning should be strict, because of the large risks, but should nevercompletely ban it. Medical research should permit on cloning, however, it would need to be cleared by a new 9-person panel (the Supreme Court of cloning ethics) to keep all tests regulated. Human cloning is a much larger issue. For now, the U.S.A. should wait for other countries to deal with the technologies behind it that would render it relatively safe, unless its only purpose was for embryonic stem cell research. Embryonic stem cell research could lead to giant leaps in treating cancer and birth defects. For this to be approved, it would also need to go through the FDA panel. Overall, regulation is needed in cloning and its research, but it must not close any doors of any possible medical advancement.

Friday, December 17, 2010

Should we Grow GM Crops?

Instructions: Read the page and click YES or NO, reach the next...click YES or NO...etc until you’ve read all the arguments -- You will need to do this 12 times in order for your votes to be tallied. Navigate the site, each of the bold headings below are links within the site


1. What is a GM Crop.

A GM crop is any food that has been modified genetically, to improve its production or solve the crops' problems.



2. List 2 arguments FOR the growing of GM crops

It will lead to the end of pesticides, which are used at a rate of 970 MILLION tons a year. Instead of spraying poison, scientists can genetically engineer resistance to bacteria and viruses that may destroy a whole harvest. Also, GM crops can be male-sterile, leading to no pollen, which incurs less allergies to people.

It can lead to the gradual end of world hunger, due to the possibly huge harvests from GM crops. Right now, 1 in 12 people are malnourished. The Nuffield Council on Bioethics feels that this possibility is enough to justify continuing research in bioengineering. If scientists can create crops that grow twice the size in half the time, then, theoretically, there could be 4 times of the capacity of agriculture.


3. List 2 arguments AGAINST the growing of GM crops.
Health risks may come up, and a new allergen may be created through engineering. It also might cause bacteria in our stomachs to somehow acquire the antibiotic gene in some GM enzymes. Also, the genes changed may take over all other natural flavors of food, because of higher sustainability of its changed species through natural selection.

The economic impact may interfere with old mom-and-pop farms, that are not able to keep up with large corporations that can afford genetic engineering departments who can better their crops. Also, it may lead to loss of culinary diversity because the small farms that create exotic foods will go out of business because they won't be able to charge a premium when other people can produce cheaper food.




*Read some of the reader’s responses.



Engineer a Crop

4. Practice this simulation until you get the largest ears of corn. How many times did it take you?

It took me once, and I had to go through 4 rounds of breeding.


What’s for Dinner?

*Click on the foods on the table to see what research is being done to bioenginner the foods.

5. List two foods and desribe how they are being modified.

Cheese is being GMed, by having rennet injected to curdle cheese quicker. Also, coffee is also being modified to not be caffeinated on the genetic level, and the post-germinated coffee will not have to go through a full decaffeination process.


Viewpoints

*Read the article titled “Are GM Food Sufficiently Regulated in the US?”

Do you think food should be labeled if it has been genetically modified? Why or Why not?

I think it should. The consumer has a right to understand any unnatural occurrences to the products they are buying. However, education should be done to tell the public that GMed products are approved by the FDA, and go through a rigorous approval process. Also, any labels applied to it should not have to be overwhelmingly large; eating GMed foods is certainly not equivalent to the huge health problems incurred by smoking, which has huge signs on its boxes telling consumers about its toxic properties.





Finished? Go to www.yahooligans.com and type "genetic engineering" in the search field. Browse some of the sites that pop up.

(Yahooligans is better than yahoo, the sites tend to be picked for education rather than for scientists and universities, you'll find more understandable and interesting sites on yahooligans than you will with Yahoo)

Write down any of the sites you visited below.

http://www.eco-pros.com/genetic_engineering.htm
http://www.foodmuseum.com/issues.html
http://www.eurekascience.com/ICanDoThat/gen_eng.htm

Monday, December 6, 2010

Epigenetics

Identical Twins:

1. The twins change over time, due to different experiences and environments that occur within the twins' life time. The epigenome conforms to these changes with epigenetic tags that can turn a gene on or off.

2. Environmental factors

Stress, diet, exercise, and release of toxins all can change the epigenome.

3. What is an imprinted gene?

An imprinted gene is a gene that does not have its epigenetic tags wiped out during "cleansing", the process in which an embryo loses most of its parents' epigenetic tags.

Your Environment, Your Epigenome:

I certainly think my diet will certainly change my future life, and my strong disliking of toxins will also contribute. My diet has been quite balanced, however, I have not been eating as healthily when I am stressed. Also, I hope I never try drugs because of their high one-time damage. However, the true dent caused by them are because of addiction, where you will never be able to rectify your epigenome.

LICK YOUR RATS

When a rat is newborn, its mother can change its future behavior forever. The change is through the simple process of grooming and licking a rat. The more licked a rat is, the more calm and relaxed it is in adulthood, and it will reciprocate the licking to younger rats. This licking activates the glucocorticoid receptor (GR), which helps reduce the response to high stress. In the hippocampus, highly-licked rats will send out a calming signal during "Flight or Fight", through the bonding of the hormone cortisol and the GR protein.

This mechanism also applies to humans. When humans are well cared for during childhood, they develop less angst and are less likely to have diabetes and heart disease. Kids who aren't usually become socially low-standing and disliked. However, too much care in humans can also shut children off from the real world which isn't as rosy as it is supposed to be. So-called "helicopter" parents and over-nurturing parents may develop a need to be carefully nurtured, which may hurt self-reliance in adulthood.

Nutrition

Throughout our lives, our diet will change the way our genes are expressed. Consumption of folic acid, B vitamins, and SAM-e, all instrumental in the creation of methyl tags, by the mother during pregnancy is vital to not have chronic under-methylation. If this occurs during your adult life, it will effect you, but it is easily reversed with proper diet.

However, mothers are not the only people who can change your diet. A will-kept log of a small Swedish towns crop harvest showed a correlation between paternal grandparents' diet between 9 and 12 and their grandkids. When there was less food in the grandparent's childhood, the grandchildren would live substantially longer than if their grandparents were fed more.

Epigenetics and the Human Brain

High dietary methyl consumption stabilizes gene expression. This difference is rooted in the epigenetic tags created by methyl, which regulates genes and their amounts of output. Children who are abused that commit suicide have substantially more methyl tags on ribosomal RNA, causing them not to be expressed. Drugs like cocaine create more epigenetic tags in vital parts of the brain, causing relapse and addiction.

Wednesday, November 24, 2010

Name _____________________________

DNA Fingerprinting

http://www.pbs.org/wgbh/nova/sheppard/analyze.html

Objective: Students will learn the steps of DNA fingerprinting by creating a fingerprint in a virtual lab. They will use this fingerprint to solve a virtual crime. The virtual lab is interactive and goes through the step-by-step process of DNA fingerprinting
Create a DNA Fingerprint ( http://www.pbs.org/wgbh/nova/sheppard/analyze.html )

Introduction:

1. DNA is unique for everyone. The only exception is if a person has what?

identical twins.

2. What are DNA fingerprints used for?

they are used to identify people, and for blood testing, like in a crime scene.


Part 1 “It Takes a Lickin”

3. What “crime” was committed?

someone ate the holographic lollipop.


4. What bodily fluid was removed from the “crime scene” to get DNA?

saliva


Part 2 “DNA Fingerprinting at the NOVA Lab”

5. What does a restriction enzyme do?

They cut the DNA into pieces.

6. What is agarose gel?

It is a slimy, JEllo-like gel that allows smaller DNA pieces to go through it quicker.

7. What is electrophoresis?

It moves molecules with an electric current.

8. Smaller fragments of DNA move ____________ than longer strands?

faster

9. Why do you need to place a nylon membrane over the gel?

To allow to move the DNA because the gel is hard to work with.

10. Probes attach themselves to __________

The complementary DNA

11. Which chemical in your “virtual lab” is radioactive?

The probes.

12. Sketch your DNA fingerprint.

3 thin lines, 2 blocks, 4 thin lines, 1 block, 1 thin line, 1 block


13. Based on your DNA fingerprint, who licked the lollipop?

Honey

 

Click on the Link “DNA Workshop” (if this link won't load, scroll down to the bottom where it says "try the non-java script version)
Once you’re there, go to the link “DNA Workshop Activity” and practice with DNA replication and protein synthesis.

Browse the DNA Workshop site.


14. What kinds of things could you do at the DNA workshop?

 
Replicate DNA, transcribe DNA to mRNA, and translate mRNA to proteins, which then creates a polypeptide.
 

Find an Article about DNA

Go to http://www.thegenesite.com/

15. Read an article about genetics at this site that you might find interesting, or use the "Search" box in the upper right hand corner to search for DNA fingerprinting.

Title of Article DNA Fingerprinting Author and Date WebMD, april, 2009

Summarize what the article was about. Write this in a paragraph format.

This article is about the health ramifications of DNA fingerprinting and why you would. You would to identify a body, test relation with thought parents, or to solve a crime. You may not be able to if you have had a blood transfusion in the past 3 months. To get this done, blood will be extracted from a vein. Minor discomfort may be experienced. Also, healthy tissue will help the clarity of the tests.
 

 

 

Thursday, November 4, 2010

On the left side of the screen is a navigation bar, click on the link to “MITOSIS” Read the text on this page and view the animation, you can slow down the video by clicking step by step through the phases.


1. Which stage does the following occur
Chromatin condenses into chromosomes prophase
Chromosomes align in center of cell. metaphase
Longest part of the cell cycle. anaphase
Nuclear envelope breaks down. prophase
Cell is cleaved into two new daughter cells. cytokinesis
Daughter chromosomes arrive at the poles. telophase
Watch the video carefully.

2. The colored chromosomes represent chromatids. There are two of each color because one is an exact duplicate of the other.

--How many chromosomes are visible at the beginning of mitosis? 92

-- How many are in each daughter cell at the end of mitosis? 46

--The little green T shaped things on the cell are: centrioles

-- What happens to the centrioles during mitosis? they go to the poles and connect all the spindle fibers to the chromosomes.

3 . Identify the stages of these cells:
Metaphase
Anaphase
Interphase

Another Mitosis Animation

Go to www.johnkyrk.com/mitosis.html

View the animation and sketch the cell in:
Prophase

nucleolus disappears then the centrioles go to the poles. after that, long green fibers called spindle fibers spread to the chromosomes.



Metaphase

the spindle fibers disconnect the the sister chromosomes at the centromere, then take the chromosomes to the centrioles.


Telophase

While the spindle fibers dissolve, two nuclei form at both sides. Then, the cells finally disconnect, and a new membrane forms.

Number, % of Cells:

Interphase: 20, 56%
Prophase: 10, 28%
Metaphase: 3, 8%
Anaphase: 2, 6%
Telophase: 1, 3%

Whitefish

View 1: Telophase
View 2: Metaphase
View 3: Interphase
View 4: Anaphase
View 5:

Onion

View 1: Anaphase
View 2: Metaphase
View 3: Prophase
View 4: Interphase
View 5: Anaphase

Tuesday, November 2, 2010

Mendel's Experiments

First, I cross-hybradized the first and fifth parents, 2nd and 3rd, 2nd and 4th, 3rd and 4th, and the 1st and 3rd. In a lot of these experiments, the traits that made that plant stand out did not pass on completely. Obviously, their must have been an influence from the recessive traits in that plant.

Althoguh, some of the plants must have not been cross-hybridized before because they produced the same trait as their other plant.

As I look at pedigrees, I realize the dominancy of certain traits, but also the weaker, but still dominant, traits. For example, the pea shape of round was dominant at a ratio of 3:2, while purple to white, purple was dominant 10:0.

Pea Color: Yellow: White
10:0
10:0
10:0
10:0
10:0
3:2

Pea Shape: Round: Wrinkled
10:0
3:2
1:1
10:0
10:0
1:9

Pod Shape: Inflated: Constricted

10:0
10:0
10:0
3:2
3:7
2:3

Pod Color Green: Yellow

1:1
3:2
10:0
4:1
10:0
10:0

Flower Color: Purple: White

7:3
1:1
10:0
1:1
10:0
10:0

Plant Size: Tall: Dwarf

10:0
3:7
1:1
10:0
10:0
9:1

Flower Position: Axial: Terminal

10:0
10:0
10:0
10:0
10:0
7:3